University of Oregon

Systems - Documentation - Academic HPC Cluster - Software Packages

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This page will be updated as additional packages are made available. Last updated: Tuesday, March 1st, 2010

Available Software Packages

Packages listed in italics are available through the Environment Modules system. Others should be in your default path.

Proprietary Packages

  • Mathematica 7.0.1
  • MATLAB r2009a
  • SAS 9.1
  • Sun Java 1.6
  • Intel Fortran Compiler 8.0

Open-source Packages

  • R 2.10
  • gcc 4.1.2 (C/C++/Fortran)
  • fsl 4.1.5
  • lapack 3.0
  • php 5.1.6
  • perl 5.8.8
  • python 2.4.3
  • openmpi 1.3.3

Environment Modules

Use of some software packages involves adding a complicated set of binary, library, and license file paths to your environment. The Environment Modules system simplifies this by allowing a single command to set up and clear out your environment as necessary.

To see a list of available modules:

[user@login ~]$ module avail
------------------------- /export/packages/modulefiles -------------------------
fsl/fsl-4.1.5(default)
ifort/ifort-8.0(default)
mpi/openmpi-1.2.7_gnu-4.1.2-64bit
mpi/openmpi-1.3.3_gnu-4.1.2-64bit(default)
mpi-pbs/openmpi-1.3.3_gnu-4.1.2-64bit(default)

To load a module (ifort, in this example) into your environment:

[user@login ~]$ module load ifort

To view a list of currently loaded modules:

[user@login ~]$ module list
Currently Loaded Modulefiles:
1) ifort/ifort-8.0

To unload all currently loaded modules:

[user@login ~]$ module purge

For more information, see the module man page.